[gmx-users] parallel problem

[Choon Peng]

Hi All,

  I wonder if anyone tried running the benchmark suite?
All goes well except when I tried running the Poly-CH2 benchmark for 2
nodes:
Fatal error: ci = -2147483648 should be in 0 .. 1727 [FILE nsgrid.c, LINE
210]
Error on node 0, will try to stop all the nodes
[0] MPI Abort by user Aborting program !
[0] Aborting program!
p0_6205:  p4_error: : -1
    p4_error: latest msg from perror: Resource temporarily unavailable
Fatal error: ci = -2147483648 should be in 0 .. 1727 [FILE nsgrid.c, LINE
210]
Error on node 1, will try to stop all the nodes
[1] MPI Abort by user Aborting program !
[1] Aborting program!
    p4_error: latest msg from perror: Resource temporarily unavailable
p1_17879:  p4_error: : -1

Anyone encountered a similar error?
Gromacs 3.0.5 did not give this error.
All other benchmark cases work as before. (Using MPICH 1.2.3 to configure
FFTw and GROMACS)

regards,
Choon Peng CHNG
Scientific Programmer
BioInformatics Institute
Singapore

On Fri, 1 Mar 2002, Erik Lindahl wrote:

> Choon Peng wrote:
>
> > Hi,
> >
> >    I've successfully compiled GROMACS 3.0.5 with MPICH 1.2.3 and get it to
> > work, thanks to help from pple
> > in this group (encountered the same error). So, it's time for my to
> > contribute back.
> >
> > Please refer to http://www.bii-sg.org/~cpchng/GROMACS_HowTo.html
> > where I've listed the steps to install FFTw, GROMACS and how to run mdrun
> > using mpirun.
> > Hope it will be of help to all MPICH users.
> >
> > I'll try compiling GROMACS 3.1 next week and report problems if
> > encountered.
> >
> > Choon Peng CHNG
> > BioInformatics Institute
> > Singapore
>