[gmx-users] bond

[jozef hritz]

> I would like to bind 2 molecules, a peptide and a 'ligand'.
> They are both mentioned separately in the same .top file.
> 
> Is this possible? I cannot just use the atom numbers, while both molecules
> start from '1'.

I think You should have both protein and ligand in the same moleculetype,
when You would like to create bond between them. Then of course they will
have different numbering.

								Jozef