[gmx-users] bond

jozef hritz hritz at tom.fos.su.se
Thu Mar 7 17:00:57 CET 2002

> I would like to bind 2 molecules, a peptide and a 'ligand'.
> They are both mentioned separately in the same .top file.
> Is this possible? I cannot just use the atom numbers, while both molecules
> start from '1'.

I think You should have both protein and ligand in the same moleculetype,
when You would like to create bond between them. Then of course they will
have different numbering.


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