[gmx-users] problems with MPI

colombo at ico.mi.cnr.it colombo at ico.mi.cnr.it
Thu Mar 7 22:23:58 CET 2002


Dear David 
Actually, I had already run lamboot first, but the result is the one reported. 
Nothing happens.
to complete the info, I must add that I am using linux red hat 7.1
with kernel 2-4-2-2. The mpi version I used is lam-6.5.6
Could it have something to do with the hardware?
Thanks for helping


> On Thu, 7 Mar 2002, giorgio colombo wrote:
> 
> >Dear All,
> >
> >I just installed gromacs3.0.5 on a pc with two AMD Athlon processors.
> >gromacs compiled fine, but when I try to run it with the command:
> >
> >mpirun -np 2 /home/gmx3.0/i686-pc-linux-gnu/bin/mdrun -s topol.tpr
> 
> run lamboot first.
> 
> (and upgrade to gromacs 3.1 maybe)
> 
> Groeten, David.
> ________________________________________________________________________
> Dr. David van der Spoel, 	Biomedical center, Dept. of Biochemistry
> Husargatan 3, Box 576,  	75123 Uppsala, Sweden
> phone:	46 18 471 4205		fax: 46 18 511 755
> spoel at xray.bmc.uu.se	spoel at gromacs.org   http://zorn.bmc.uu.se/~spoel
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> 
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