[gmx-users] fitting

[rams at poori.biochem.uiowa.edu]

Hello All,

This is driving me crazy.

I have a pdb file that I generate from a gro file of a protein.

I have a 1ns trr file and the tpr file from there.

I want to fit all the structures from the tpr file on to the pdb file I
already have.

It says in the manual that you can use g_rms or trjconv to fit to a
reference structure.  How do i say what the reference structure is

thanks.

Rams.


-- 
S. Ramaswamy
Department of Biochemistry.
University of Iowa.