[gmx-users] emtol in a water box

K.A. Feenstra Feenstra at chem.vu.nl
Mon Nov 4 08:07:42 CET 2002


Tanos wrote:
> 
>     I am trying to perform the minimization until about 41,8 because in a
> energy minimization in vacum this is the ideal value, but I am not sure if
> it would be the same to a water's box. I am also looking for examples in
> literature but it would be very nice if someone answer this question

The water box will add it's own energy, it is a more or less constant
amount per water molecule, which I can't remember exactly. 
If you need/want to mimimize further (which is not necessary for most
purposes), you could perform the minimization in double precision.
(Compile a double precision mdrun if you haven't already.)


-- 
Groetjes,

Anton
 ________ ___________________________________________________________
|        | Anton Feenstra                                            |
| .      | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
| |----  | De Boelelaan 1083 - 1081 HV Amsterdam - The Netherlands   |
| |----  | Tel: +31 20 44 47608 - Fax: +31 20 44 47610               |
| ' __   | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
|  /  \  |-----------------------------------------------------------|
| (    ) | Dept. of Biophysical Chemistry - University of Groningen  |
|  \__/  | Nijenborgh 4 - 9747 AG Groningen - The Netherlands        |
|   __   | Tel +31 50 363 4327 - Fax +31 50 363 4800                 |
|  /  \  | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton   |
| (    ) |-----------------------------------------------------------|
|  \__/  | "If You See Me Getting High, Knock Me Down"               |
|        | (Red Hot Chili Peppers)                                   |
|________|___________________________________________________________|





More information about the gromacs.org_gmx-users mailing list