[gmx-users] emtol in a water box
K.A. Feenstra
Feenstra at chem.vu.nl
Mon Nov 4 08:07:42 CET 2002
Tanos wrote:
>
> I am trying to perform the minimization until about 41,8 because in a
> energy minimization in vacum this is the ideal value, but I am not sure if
> it would be the same to a water's box. I am also looking for examples in
> literature but it would be very nice if someone answer this question
The water box will add it's own energy, it is a more or less constant
amount per water molecule, which I can't remember exactly.
If you need/want to mimimize further (which is not necessary for most
purposes), you could perform the minimization in double precision.
(Compile a double precision mdrun if you haven't already.)
--
Groetjes,
Anton
________ ___________________________________________________________
| | Anton Feenstra |
| . | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
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