[gmx-users] Problem Building Gromacs on an IBM Power4 AIX 5.1L System

[Angelo R. Rossi]

> Hello:
>
> I am getting the errors shown below when I type either make or gmake for
> Gromacs on an IBM Power4 system running AIX 5.1L after configuring
> successfully.  I am trying to build the MPI version.  I first built fftw ok
> which required a configure.  This means to me that AIX should then work ok
> on Gromacs. If the configure worked for fftw, it should work for Gromacs.
> The configure for Gromacs ended successfully and gave me a makfile which I
> include here:
>
> (See attached file: Makefile)
>
> I appreciate any help you can give me to get this resolved.
>
> Best regards,
>
> Angelo
>
> make[1]: Entering directory
> `/afs/ipp-garching.mpg.de/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/src'
> gmake  all-recursive
> gmake[2]: Entering directory
> `/afs/ipp-garching.mpg.de/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/src'
> Making all in gmxlib
> gmake[3]: Entering directory
> `/afs/ipp-garching.mpg.de/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/src/gmxlib'
> source='3dview.c' object='3dview.lo' libtool=yes \
> depfile='.deps/3dview.Plo' tmpdepfile='.deps/3dview.TPlo' \
> depmode=aix /bin/sh ../../config/depcomp \
> /bin/sh ../../libtool --mode=compile mpcc -DHAVE_CONFIG_H -I. -I.
> -I../../src  -I../../include -DGMXLIBDIR
> =\"/afs/ipp/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/share/top\"
> -I/afs/ipp/home/a/arossi/Computational_Chemistry/fftw-2.1.3/include  -O3
> -qarch=pwr4 -qtune=pwr4 -qmaxmem=16384 -c -o 3dview.lo `test -f 3dview.c ||
> echo './'`3dview.c
> mpcc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -DGMXLIBDIR
> =\"/afs/ipp/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/share/top\"
> -I/afs/ipp/home/a/arossi/Computational_Chemistry/fftw-2.1.3/include -O3
> -qarch=pwr4 -qtune=pwr4 -qmaxmem=16384 -c -M 3dview.c -o 3dview.o
> "/usr/include/stdio.h", line 443.12: 1506-343 (S) Redeclaration of
> fgetpos64 differs from previous declaration on line 269 of
> "/usr/include/stdio.h".
> "/usr/include/stdio.h", line 443.12: 1506-377 (I) The type "long long*" of
> parameter 2 differs from the previous type "long*".
> "/usr/include/stdio.h", line 446.12: 1506-343 (S) Redeclaration of fseeko64
> differs from previous declaration on line 389 of "/usr/include/stdio.h".
> "/usr/include/stdio.h", line 446.12: 1506-377 (I) The type "long long" of
> parameter 2 differs from the previous type "long".
> "/usr/include/stdio.h", line 447.12: 1506-343 (S) Redeclaration of
> fsetpos64 differs from previous declaration on line 271 of
> "/usr/include/stdio.h".
> "/usr/include/stdio.h", line 447.12: 1506-377 (I) The type "const long
> long*" of parameter 2 differs from the previous type "const long*".
> "/usr/include/stdio.h", line 448.16: 1506-343 (S) Redeclaration of ftello64
> differs from previous declaration on line 390 of "/usr/include/stdio.h".
> "/usr/include/stdio.h", line 448.16: 1506-050 (I) Return type "long long"
> in redeclaration is not compatible with the previous return type "long".
> "/usr/include/unistd.h", line 167.17: 1506-343 (S) Redeclaration of lseek64
> differs from previous declaration on line 165 of "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 167.17: 1506-050 (I) Return type "long long"
> in redeclaration is not compatible with the previous return type "long".
> "/usr/include/unistd.h", line 167.17: 1506-377 (I) The type "long long" of
> parameter 2 differs from the previous type "long".
> "/usr/include/sys/lockf.h", line 50.20: 1506-343 (S) Redeclaration of
> lockf64 differs from previous declaration on line 48 of
> "/usr/include/sys/lockf.h".
> "/usr/include/sys/lockf.h", line 50.20: 1506-377 (I) The type "long long"
> of parameter 3 differs from the previous type "long".
> "/usr/include/unistd.h", line 602.33: 1506-343 (S) Redeclaration of
> ftruncate64 differs from previous declaration on line 600 of
> "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 602.33: 1506-377 (I) The type "long long" of
> parameter 2 differs from the previous type "long".
> "/usr/include/unistd.h", line 629.33: 1506-343 (S) Redeclaration of
> truncate64 differs from previous declaration on line 627 of
> "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 629.33: 1506-377 (I) The type "long long" of
> parameter 2 differs from the previous type "long".
> "/usr/include/unistd.h", line 646.33: 1506-343 (S) Redeclaration of pread64
> differs from previous declaration on line 643 of "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 646.33: 1506-377 (I) The type "long long" of
> parameter 4 differs from the previous type "long".
> "/usr/include/unistd.h", line 647.33: 1506-343 (S) Redeclaration of
> pwrite64 differs from previous declaration on line 644 of
> "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 647.33: 1506-377 (I) The type "long long" of
> parameter 4 differs from the previous type "long".
> "/usr/include/unistd.h", line 712.25: 1506-343 (S) Redeclaration of
> fclear64 differs from previous declaration on line 709 of
> "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 712.25: 1506-050 (I) Return type "long long"
> in redeclaration is not compatible with the previous return type long".
> "/usr/include/unistd.h", line 712.25: 1506-377 (I) The type "long long" of
> parameter 2 differs from the previous type "long".
> "/usr/include/unistd.h", line 713.25: 1506-343 (S) Redeclaration of
> fsync_range64 differs from previous declaration on line 710 of
> "/usr/include/unistd.h".
> "/usr/include/unistd.h", line 713.25: 1506-377 (I) The type "long long" of
> parameter 3 differs from the previous type "long".
> gmake[3]: *** [3dview.lo] Error 1
> gmake[3]: Leaving directory
> `/afs/ipp-garching.mpg.de/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/src/gmxlib'
> gmake[2]: *** [all-recursive] Error 1
> gmake[2]: Leaving directory
> `/afs/ipp-garching.mpg.de/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/src'
> gmake[1]: *** [all] Error 2
> gmake[1]: Leaving directory
> `/afs/ipp-garching.mpg.de/home/a/arossi/Computational_Chemistry/gromacs-3.1.4/src'
> gmake: *** [all-recursive] Error 1
>
>   ------------------------------------------------------------------------
>                Name: Makefile
>    Makefile    Type: unspecified type (application/octet-stream)
>            Encoding: base64

--
Angelo R. Rossi
IBM Research Division
T. J. Watson Research Center
Yorktown Heights, New York 10598
e-mail: rossi at watson.ibm.com
Voice:  914-945-3834
FAX:    914-845-2141


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