[gmx-users] pressure scaling warning
giacomo de mori
g.demori at ico.mi.cnr.it
Tue Oct 8 13:00:16 CEST 2002
Hi all!
I'm running a simulation on a protein in water with PME, dt=0.005, 2 ions (CL-)
it crashed many time, but the last time crashed with this error:
------------------
Initializing LINear Constraint Solver
number of constraints is 319
average number of constraints coupled to one constraint is 2.8
Rel. Constraint Deviation: Max between atoms RMS
Before LINCS 0.298636 166 167 0.025815
After LINCS 0.005376 27 28 0.000467
Going to use C-settle (874 waters)
wo = 0.888096, wh =0.0559521, wohh = 18.0154, rc = 0.081665, ra = 0.00645837
rb = 0.051255, rc2 = 0.16333, rone = 1, dHH = 0.16333, dOH = 0.1
Energies (kJ/mol)
G96Angle Proper Dih. Improper Dih. LJ-14 Coulomb-14
4.16193e+02 3.15398e+02 1.11361e+02 8.89128e+01 4.23651e+03
LJ (SR) Coulomb (SR) Coulomb (LR) Potential Kinetic En.
1.07557e+04 -7.80597e+04 -1.66567e+04 -7.87923e+04 1.59899e+04
Total Energy Temperature Pressure (bar)
-6.28024e+04 3.23706e+02 4.38344e+02
Step 51 Warning: pressure scaling more than 1%, mu: 6898.3 6898.3 6898.3
Rel. Constraint Deviation: Max between atoms RMS
Before LINCS 0.298636 166 167 0.025815
After LINCS 0.005376 27 28 0.000467
Going to use C-settle (874 waters)
wo = 0.888096, wh =0.0559521, wohh = 18.0154, rc = 0.081665, ra = 0.00645837
rb = 0.051255, rc2 = 0.16333, rone = 1, dHH = 0.16333, dOH = 0.1
Energies (kJ/mol)
G96Angle Proper Dih. Improper Dih. LJ-14 Coulomb-14
4.16193e+02 3.15398e+02 1.11361e+02 8.89128e+01 4.23651e+03
LJ (SR) Coulomb (SR) Coulomb (LR) Potential Kinetic En.
1.07557e+04 -7.80597e+04 -1.66567e+04 -7.87923e+04 1.59899e+04
Total Energy Temperature Pressure (bar)
-6.28024e+04 3.23706e+02 4.38344e+02
Step 51 Warning: pressure scaling more than 1%, mu: 6898.3 6898.3 6898.3
------------
What does it means? what could i do?
thank you
Giacomo
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