[gmx-users] To run our files

[K.A. Feenstra]

subramaniam sivaraman wrote:
> 
> Hi,
>   I am very new to gromacs and I have started using
> it. I have gone through the models present including
> water and speptide. Now I would like to know how to
> run my own protein. Should I store it in a folder
> within gromacs or I can store it anywhere so that
> there is no problem in accessing. Hope someone of you
> can solve this.

Store your files in any directory. Then, run the gromacs tools
also in that directory.


-- 
Groetjes,

Anton
 ________ ___________________________________________________________
|        | Anton Feenstra                                            |
| .      | Dept. of Pharmacochemistry - Vrije Universiteit Amsterdam |
| |----  | De Boelelaan 1083 - 1081 HV Amsterdam - The Netherlands   |
| |----  | Tel: +31 20 44 47608 - Fax: +31 20 44 47610               |
| ' __   | Feenstra at chem.vu.nl - http://www.chem.vu.nl/afdelingen/FAR|
|  /  \  |-----------------------------------------------------------|
| (    ) | Dept. of Biophysical Chemistry - University of Groningen  |
|  \__/  | Nijenborgh 4 - 9747 AG Groningen - The Netherlands        |
|   __   | Tel +31 50 363 4327 - Fax +31 50 363 4800                 |
|  /  \  | K.A.Feenstra at chem.rug.nl - http://md.chem.rug.nl/~anton   |
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