[gmx-users] problems with installation!

[Mehmet Suezen]

Hi,

Maybe you should set $LDPATH for proper library path. Look at
gromacs.org installation notes.
(i.e. http://gromacs.org/installation/configuration.php)

cheers, Mehmet

Ruben Martinez Buey wrote:
> 
> Dear all,
> I am trying to install gromacs on a SG Octane (IRIX 6.5), but when I run
> the script configure, an error occurs:
> 
> ./configure
> 
> checking build system type... mips-sgi-irix6.5
> checking host system type... mips-sgi-irix6.5
> checking for a BSD compatible install... config/install-sh -c
> checking whether build environment is sane... yes
> checking for awk... awk
> checking whether make sets ${MAKE}... yes
> checking for cc... no
> checking for xlc... no
> checking for gcc... gcc
> checking for C compiler default output... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for executable suffix...
> checking for object suffix... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for style of include used by make... GNU
> checking dependency style of gcc... gcc
> checking for f77... no
> checking for xlf... no
> checking for xlf77... no
> checking for cf77... no
> checking for fl32... no
> checking for g77... g77
> checking whether we are using the GNU Fortran 77 compiler... yes
> checking whether g77 accepts -g... yes
> checking how to get verbose linking output from g77... -v
> checking for Fortran 77 libraries...
> -L/usr/freeware/lib/gcc-lib/mips-sgi-irix6.2/2.95.2 -L/usr/bin
> -L/usr/freeware/lib -lg2c -lm -L/usr/lib32/mips3 -L/usr/lib32
> checking for dummy main to link with Fortran 77 libraries... none
> checking for Fortran 77 name-mangling scheme... lower case, underscore,
> extra underscore
> checking how to run the C preprocessor... gcc -E
> gcc: unrecognized option `-version'
> gcc: No input files
> gcc: unrecognized option `-version'
> gcc: No input files
> checking whether gcc accepts -O6... yes
> checking whether gcc accepts -malign-double... no
> checking whether gcc accepts -funroll-all-loops... yes
> checking whether gcc accepts  -r10000 -mips4 -O3 -OPT:IEEE_arithmetic=3
> -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1
> -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174
> -D__INLINE_INTRINSICS -O6 -fomit-frame-pointer -finline-functions -Wall
> -Wno-unused -funroll-all-loops... no
> *******************************************************************
> * Sorry, these optimization settings don't seem to work for       *
> * your C compiler. Use make CFLAGS=..., or edit the top Makefile. *
> *******************************************************************
> checking whether g77 accepts -O3 -ffast-math -fomit-frame-pointer
> -finline-functions -funroll-all-loops -Wall -Wno-unused... yes
> checking for ident... /usr/sbin/ident
> checking whether the compiler supports ident... yes
> checking for ld used by GCC... /usr/bin/ld
> checking if the linker (/usr/bin/ld) is GNU ld... no
> checking for /usr/bin/ld option to reload object files... -r
> checking for BSD-compatible nm... /usr/bin/nm -B
> checking whether ln -s works... yes
> checking how to recognise dependant libraries... pass_all
> checking for dlfcn.h... yes
> checking the maximum length of command line arguments... 8192
> checking command to parse /usr/bin/nm -B output from gcc object...
> failed
> checking for objdir... .libs
> checking for ranlib... :
> checking for strip... strip
> checking if gcc static flag  works... no
> checking if gcc supports -fno-rtti -fno-exceptions... yes
> checking for gcc option to produce PIC...
> checking if gcc PIC define -DPIC works... yes
> checking if gcc supports -c -o file.o... yes
> checking whether the gcc linker (/usr/bin/ld -n32) supports shared
> libraries... yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... no
> checking dynamic linker characteristics... irix6.5 ld.so
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> configure: creating libtool
> appending configuration tag "F77" to libtool
> checking if libtool supports shared libraries... yes
> checking whether to build shared libraries... no
> checking whether to build static libraries... yes
> checking for g77 option to produce PIC...
> checking if g77 PIC define -DPIC works... yes
> checking if g77 supports -c -o file.o... yes
> checking whether the g77 linker (/usr/bin/ld -n32) supports shared
> libraries... yes
> checking how to hardcode library paths into programs... immediate
> checking whether stripping libraries is possible... no
> checking dynamic linker characteristics... irix6.5 ld.so
> checking whether ln -s works... yes
> checking for special C compiler options needed for large files... no
> checking for _FILE_OFFSET_BITS value needed for large files... no
> checking for _LARGE_FILES value needed for large files... no
> checking for _LARGEFILE_SOURCE value needed for large files... no
> checking for fseeko... no
> checking for sqrt in -lm... no
> configure: error: No math library found
> 
> Do you know what is happening?
> Thanks a lot
> Best regards
> Ruben
> --
> ___________________________________________
> 
> Rubén Martínez-Buey. PhD student
> Protein Function and Structure Dept. Lab. 352
> Centro de Investigaciones Biológicas (CIB-CSIC)
> C/ Velázquez, 144  28006  MADRID
> Tlf: +34-91-561 18 00 ext. 4380
> ___________________________________________
> 
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