[gmx-users] Installation of Gromacs 3.1.3 on IBM RS/6000

[wnoon at rice.edu]

hi,
  I'm installing gromacs on an IBM "Regatta."  A previous message discussed 
installation problems due to an inconsistency in the IBM include files.  I 
had the exact same problem and therefore used the --disable-largefile option 
to get around the issue.  Unfortunately, I get a new error shown below.  Any 
suggestions?
  Thanks, William Noon

mpicc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/include -I../../include -
DGMXLIBDIR=\"/home/ma/wnoon/exec/gromacs/share/top\" -
I/home/ma/wnoon/exec/fftw/include -I/home/ma/wnoon/exec/mpi/include -O3 -
qarch=pwr3 -qtune=pwr3 -qmaxmem=16384 -c -M atomprop.c

"/usr/include/macros.h", line 30.10: 1506-236 (W) Macro name abs has been 
redefined.
"/usr/include/macros.h", line 30.10: 1506-358 (I) "abs" is defined on line 
372 of /usr/include/stdlib.h.
"atomprop.c", line 79.11: 1506-045 (S) Undeclared identifier debug.
...etc.