[gmx-users] best way to create a pdb file.
senthilk at engin.umich.edu
Fri Sep 27 18:22:39 CEST 2002
What is the easiest way to accomplish the following?
I have a pdb file of a lipid bilayer. I need to insert a protein bundle
into this bilayer. I have the pdb coordinates of the protein bundle
also. Now, I edit the lipid pdb file to create a hole (that would
approximately fit my bundle) at the center. Both the bundle and the
lipids are centered using editconf. Upto this point, I have two pdb
files. Now, what is the easiest way to create a single pdb file of this
structure (That would essentially have the bundle inserted into the
I have to go through a lot of manual manipulations to be able to do that
at this point. IS there an easier way to accomplish this?
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