[gmx-users] Concatenating the trajectories and visualizing in VMD

[David van der Spoel]

On Fri, 2003-04-11 at 14:03, Sunita Patel wrote:
> Dear GROMACS Users,
> 
> After concatenating the trajectories and making them centered by using
> trjconv, I am getting problem while visualizing in VMD.All the water
> molecules are comming as lines .
> 
> Does anyone helps me to overcome the problem .
Are you sure the trajectories describe the same molecules?
Did you e.g. use shuffling on a parallel computer?

> 
> Best Wishes,
> Sunita
> 
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-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Dept. of Cell & Mol. Biology
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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