[gmx-users] Protein with ligand

[Rahul Banerjee]

Dear All,
        I was trying to simulate a protein with a
ligand. But it was giving Fatal error because the
topology of the was not known to pdb2gmx. Now I
created topology for that molecule using PRODRG
server. I am not getting where I have to add the
topology(and with what extension) so that I can
proceed.

	Thanking you in anticipation,

With best wishes,
Rahul Banerjee

________________________________________________________________________
Missed your favourite TV serial last night? Try the new, Yahoo! TV.
       visit http://in.tv.yahoo.com