[gmx-users] Protein with ligand

[Virtual Daan]

Hi

Read the FAQ and the PDF file of a GROMACS-protein-ligand tutorial
therein.

Daan

On Mon, 21 Apr 2003, [iso-8859-1] Rahul Banerjee wrote:

> Dear All,
>         I was trying to simulate a protein with a
> ligand. But it was giving Fatal error because the
> topology of the was not known to pdb2gmx. Now I
> created topology for that molecule using PRODRG
> server. I am not getting where I have to add the
> topology(and with what extension) so that I can
> proceed.
>
> 	Thanking you in anticipation,
>
> With best wishes,
> Rahul Banerjee
>
> ________________________________________________________________________
> Missed your favourite TV serial last night? Try the new, Yahoo! TV.
>        visit http://in.tv.yahoo.com
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
>


##############################################################################

Dr. Daan van Aalten                    Wellcome Trust CDA Fellow
Wellcome Trust Biocentre, Dow Street   TEL: ++ 44 1382 344979
Div. of Biol.Chem. & Mol.Microbiology  FAX: ++ 44 1382 345764
School of Life Sciences                E-mail: dava at davapc1.bioch.dundee.ac.uk
Univ. of Dundee, Dundee DD1 5EH, UK    WWW: http://davapc1.bioch.dundee.ac.uk

        O     C           O     C         Visit the PRODRG server to take
        "     |           "     |         the stress out of your topologies!
  N--c--C--N--C--C--N--C--C--N--C--C--O
     |           "     |           "      http://davapc1.bioch.dundee.ac.uk/
     C-C-O       O   C-C-C         O             programs/prodrg/prodrg.html
       "
       O