[gmx-users] how to shift the peptide towards the bottom of the box??

Vivek Raut vraut at CLEMSON.EDU
Thu Aug 7 23:51:01 CEST 2003


i have a peptide (2.gro)

i build the box around it by giving command: editconf -f 1.gro -o 2.gro -bt 
tric -box 3.5 6.0 4.23 -angles 90 90 90

when i solvate the peptide by the 'genbox' command, i see the peptide at 
the center of the box. i want that peptide to be at the bottom of that my 
instead of center. what commands should i add to the commandline ??


Vivek Raut
Graduate Research Assistant
Department of Bioengineering
Clemson University
Clemson, SC- 29631. USA
Email: vraut at clemson.edu
Phone: 864-650-1431

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