[gmx-users] how to shift the peptide towards the bottom of the box??

[David]

On Thu, 2003-08-07 at 23:49, Vivek Raut wrote:
> hi,
> 
> i have a peptide (2.gro)
> 
> i build the box around it by giving command: editconf -f 1.gro -o 2.gro -bt 
> tric -box 3.5 6.0 4.23 -angles 90 90 90
> 
> when i solvate the peptide by the 'genbox' command, i see the peptide at 
> the center of the box. i want that peptide to be at the bottom of that my 
> instead of center. what commands should i add to the commandline ??
> 
If your box is 4 x 4 x 4 you could do:
editcont -center 2 2 0

> Thanks,
> vivek
> 
> -------------------------------------------------------------------------------------------------------------------------------------------
> Vivek Raut
> Graduate Research Assistant
> Department of Bioengineering
> Clemson University
> Clemson, SC- 29631. USA
> Email: vraut at clemson.edu
> Phone: 864-650-1431
> --------------------------------------------------------------------------------------------------------------------------------------------
> 
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-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Dept. of Cell and Molecular Biology
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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