[gmx-users] secondary structure

[Marc Ceruso]

On Wed, 13 Aug 2003, Yuguang Mu wrote:

>
> Dear All,
> DO you have some good suggestions about the programs to assign
> the secondary structures of peptides, proteins with known coordinates,
> such as, alpha, beta, turns, 3_10 helix ?
>
if you have the coordinates of your peptide, you can try stride or dssp...
if you need to build your peptide with a certain secondary structure you
can try swiss pdbviewer/Deepview.





>
> Dr. Yuguang Mu
> Institute for Physical and Theoretical Chemistry
> J.W. Goethe University Frankfurt am Main
> Marie Curie Str. 11
> 60439 Frankfurt/Main, Germany
> Tel: +49-(0)69-798-29711
>
>
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
>