[gmx-users] secondary structure
mceruso at physbio.mssm.edu
Wed Aug 13 16:26:02 CEST 2003
On Wed, 13 Aug 2003, Yuguang Mu wrote:
> Dear All,
> DO you have some good suggestions about the programs to assign
> the secondary structures of peptides, proteins with known coordinates,
> such as, alpha, beta, turns, 3_10 helix ?
if you have the coordinates of your peptide, you can try stride or dssp...
if you need to build your peptide with a certain secondary structure you
can try swiss pdbviewer/Deepview.
> Dr. Yuguang Mu
> Institute for Physical and Theoretical Chemistry
> J.W. Goethe University Frankfurt am Main
> Marie Curie Str. 11
> 60439 Frankfurt/Main, Germany
> Tel: +49-(0)69-798-29711
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