[gmx-users] RNA h-bonds
feenstra at chem.vu.nl
Mon Dec 1 08:51:04 CET 2003
wang chuanming wrote:
> dear all
> When I use the gromacs force field(0) to deal with RNA, I found PDB2GMX
> couldn't detect any donnor and acceptor which form the H-bonds. but with
> protein, it could detect perfectly. So,what can i do to solve this problem
> in order that PDB2GMX can find the donnor and acceptor in RNA.
> Thnx in advance for any helpful suggestions.
AFAIK, pdb2gmx doesn't do any detection of hydrogen bonds!
Could you please explain more precisely what your problem is?
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
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