[gmx-users] RNA h-bonds

[Anton Feenstra]

wang chuanming wrote:

> dear all
> When I  use the gromacs force field(0) to deal with RNA, I found PDB2GMX 
> couldn't detect any donnor and acceptor which form the H-bonds. but with 
> protein, it could detect perfectly. So,what can i do to solve this problem
> in order that PDB2GMX can find the donnor and acceptor in RNA.
> 
> Thnx in advance for any helpful suggestions.

AFAIK, pdb2gmx doesn't do any detection of hydrogen bonds!
Could you please explain more precisely what your problem is?


-- 
Groetjes,

Anton
 _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
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