[gmx-users] Problem with Na
feenstra at chem.vu.nl
Thu Dec 11 09:23:10 CET 2003
> On Fri, 2003-12-05 at 19:04, Mauricio Arenas Salinas wrote:
>>i try to do MD for protein with Na and water, but when
>>the EM finishes, the final structure does not
>>present/display moleculas of Na. To that can have this?
> are they in the confout.gro file?
> what do you mean display?
Have you checked the options of your viewing program? Some only display
bonds by default, and no atoms. In that case, Na+ will not show up.
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| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
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