[gmx-users] Problem with Na

[Anton Feenstra]

David wrote:

> On Fri, 2003-12-05 at 19:04, Mauricio Arenas Salinas wrote:
> 
>>hi All:
>>i try to do MD for protein with Na and water,  but when 
>>the EM finishes, the final structure does not 
>>present/display moleculas of Na. To that can have this? 
> 
> 
> are they in the confout.gro file?
> 
> what do you mean display?

Have you checked the options of your viewing program? Some only display
bonds by default, and no atoms. In that case, Na+ will not show up.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
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|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
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