[gmx-users] g_mindist

[xiaoyi li]

Dear all,

When I try to count the number of contacts of two groups, the output
file numcont.xvg always shows 0 even when i set the distance is 4nm
which is the same as my box. Why? What's the problem?

This is the command I used:

g_mindist -f -s ligninmd.tpr -n activesite.ndx -od mindistbeta-beta -on
numcontbeta-beta -d 4

Best regards,
Xiaoyi

Uppsala University
Sweden