[gmx-users] how to keep the simulation box during simulation
spoel at xray.bmc.uu.se
Tue Dec 16 17:17:00 CET 2003
On Tue, 2003-12-16 at 16:58, Itamar Kass wrote:
> So this way the xy plane will remain constant? I already used a
> minimized membrane structure.
yes it should remain constant.
> ----- Original Message -----
> From: "David" <spoel at xray.bmc.uu.se>
> To: <gmx-users at gromacs.org>
> Sent: Tuesday, December 16, 2003 4:45 PM
> Subject: Re: [gmx-users] how to keep the simulation box during simulation
> > On Tue, 2003-12-16 at 16:26, Itamar Kass wrote:
> > > Dear Xavier, I put compressibility 0 on the z axes in order to let
> > > axis to change, and to prevent changes in the xy plane, is that wronge?
> > >
> > compressibility 0 means incompressible.
> > >
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David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
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