[gmx-users] atom type not found error

Ruben Martinez Buey ruben at akilonia.cib.csic.es
Tue Dec 16 18:23:00 CET 2003

Hi Yu Sun,

Probably, your pdb file contains heteroatoms or has a strange 
nomenclature that GROMACS cannot recognice.

Have you checked this?

Hope this help

good luck!


Yu Sun (Denis) wrote:

> Dear Gmx usrs,
> When using pdb2gmx, selected forcefield 0, got fatal error:
> Atom type N(residue ABU) not found in atomtype database
> Could someone kindly explain to me how to fix this problem ?
> Thanks,
> Denis
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Ruben Martínez-Buey. PhD student.
Protein Function and Structure
Centro de Investigaciones Biológicas
Consejo Superior de Investigaciones Científicas
C/ Ramiro de Maeztu, 9
28040 Madrid (SPAIN)
phone:34-918373112 ext 4380
fax:  34-915360432

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