[gmx-users] how to explain the pull.pdo

[xiaoyi li]

Thanks Anton for replying my g_minidist question. I will check it again.
I have another question which I couldn't find in the manual.

What's the meaning of each column of pull.pdo? In the manual it said
that there are forces and positions in it. But I have ten columns in my
file as following:

# AFM	3.0
# Component selection: 1 1 1
# nSkip 1
# Ref. Group 'water'
# Nr. of pull groups 1
# Group 1 'lignin'  afmVec 0.000000 0.000000 1.000000  AfmRate 0.000050 
AfmK 100.000000
#####
0.000000	1.877096	1.740127	4.295215	2.355149	1.877096	3.048670	1.740127	4.046979	4.295215	
0.002000	1.877077	1.740125	4.295197	2.355162	1.877077	3.048640	1.740125	4.046958	4.295197	
0.004000	1.877253	1.740325	4.295660	2.355470	1.877253	3.048933	1.740325	4.047388	4.295660	
0.006000	1.877312	1.740439	4.295895	2.355684	1.877312	3.049052	1.740439	4.047609	4.295895	
0.008000	1.877356	1.740551	4.296117	2.355922	1.877356	3.049136	1.740551	4.047808	4.296117	


Thanks in advance!

Xiaoyi

Uppsala University
Sweden