[gmx-users] very strange directory dependent segmentation faults please HELP!

[Claudio J. Margulis]

Does anybody understand this behavior:
 
node1-claudiom 63 % pwd
/scratch/claudiom/111
node1-claudiom 64 % ls
topol.tpr
node1-claudiom 65 % mdrun
                         :-)  G  R  O  M  A  C  S  (-:
 

Segmentation fault
node1-claudiom 66 %
 
 
BUT CHECK THIS OUT
 
node1-claudiom 66 % pwd
/scratch/claudiom/111
node1-claudiom 67 % cd ..
node1-claudiom 68 % pwd
/scratch/claudiom
node1-claudiom 69 % mv 111 tt
node1-claudiom 70 % cd tt
node1-claudiom 71 % pwd
/scratch/claudiom/tt
node1-claudiom 72 % mdrun
                         :-)  G  R  O  M  A  C  S  (-:
 

                  Green Red Orange Magenta Azure Cyan Skyblue
 

                            :-)  VERSION 3.1.4  (-:
 

 

       Copyright (c) 1991-2002, University of Groningen, The Netherlands
         This program is free software; you can redistribute it and/or
          modify it under the terms of the GNU General Public License
         as published by the Free Software Foundation; either version 2
             of the License, or (at your option) any later version.
 

                                :-)  mdrun  (-:
 

Option     Filename  Type          Description
------------------------------------------------------------
  -s      topol.tpr  Input         Generic run input: tpr tpb tpa
  -o       traj.trr  Output        Full precision trajectory: trr trj
  -x       traj.xtc  Output, Opt.  Compressed trajectory (portable xdr
format)
  -c    confout.gro  Output        Generic structure: gro g96 pdb
  -e       ener.edr  Output        Generic energy: edr ene
  -g         md.log  Output        Log file
-dgdl      dgdl.xvg  Output, Opt.  xvgr/xmgr file
-table    table.xvg  Input, Opt.   xvgr/xmgr file
 
 
 
AND NOW IT RUNS FINE, SAME TPR FILE JUST DIFFERENT DIRECTORY .
 
SOME TIMES IT RUNS FINE IN SOME DIRECTORIES AND SOME TIME IT DOESN'T
IT'S DRIVING ME CRAZY
BECAUSE I CAN'T FIGURE OUT WHY THIS IS SO. HALF OF MY JOBS IN THE PBS
QUEUE RUN FINE, THE REST
DIED OF SEGMENTATION FAULT.
 
ANY CLUES?
THANKS!!!
 
Claudio.
 
 
------------------------------------------------------------------------
-----------------
Claudio J. Margulis
Assistant Professor
Department of Chemistry
University of Iowa
319 CB
319-335-0615 (office)
http://www.uiowa.edu/~chemdept/faculty/margulis/index.html
------------------------------------------------------------------------
-----------------
 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20031224/b0e30ec5/attachment.html>