[gmx-users] GROMACS compilation problem on IBM AIX

[jithgmx]

Hi,

I'm trying to compile GROMACS 3.1.4 on a cluster of IBM p630. After running the configure script successfully, I tried to 'make'. But I got the following error (please see below). 

As per the info from earlier posting about a similar problem, I used the disable-largefile option and it got compiled. Is there any other solution? 


While trying to execute the dppc benchmark I'm getting INF values for constraints..and Warning: 1-4 interaction at distance larger than 1. Is there any problem?


thanks & regards
Jithesh
---------
log from make..

Making all in src
make all-recursive
Making all in gmxlib
cd ../.. && CONFIG_HEADERS= CONFIG_LINKS=
CONFIG_FILES=src/gmxlib/Makefile /bin/sh ./config.status
config.status: creating src/gmxlib/Makefile
source='3dview.c' object='3dview.lo' libtool=yes
depfile='.deps/3dview.Plo' tmpdepfile='.deps/3dview.TPlo'
depmode=aix /bin/sh ../../config/depcomp /bin/sh ../../libtool
--mode=compile xlc128_r -DHAVE_CONFIG_H -I. -I. -
I../../src -I../../include
-DGMXLIBDIR=\"/home/bioinfo/jithesh/GROMACS/share/gromacs/top\"
-I/home/bioinfo/jithes
h/FFTW/include -O3 -qarch=pwr4 -qtune=pwr4 -qmaxmem=16384 -c -o 3dview.lo
`test -f 3dview.c || echo './'`3dview.c
xlc128_r -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include
-DGMXLIBDIR=\"/home/bioinfo/jithesh/GROMACS/share/grom
acs/top\" -I/home/bioinfo/jithesh/FFTW/include -O3 -qarch=pwr4 -qtune=pwr4
-qmaxmem=16384 -c -M 3dview.c
"/usr/include/stdio.h", line 443.12: 1506-343 (S) Redeclaration of
fgetpos64 differs from previous declaration on l
ine 269 of "/usr/include/stdio.h".
"/usr/include/stdio.h", line 443.12: 1506-377 (I) The type "long long*" of
parameter 2 differs from the previous ty
pe "long*".
"/usr/include/stdio.h", line 446.12: 1506-343 (S) Redeclaration of
fseeko64 differs from previous declaration on li
ne 389 of "/usr/include/stdio.h".
"/usr/include/stdio.h", line 446.12: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous typ
e "long".
"/usr/include/stdio.h", line 447.12: 1506-343 (S) Redeclaration of
fsetpos64 differs from previous declaration on l
ine 271 of "/usr/include/stdio.h".
"/usr/include/stdio.h", line 447.12: 1506-377 (I) The type "const long
long*" of parameter 2 differs from the previ
ous type "const long*".
"/usr/include/stdio.h", line 448.16: 1506-343 (S) Redeclaration of
ftello64 differs from previous declaration on li
ne 390 of "/usr/include/stdio.h".
"/usr/include/stdio.h", line 448.16: 1506-050 (I) Return type "long long"
in redeclaration is not compatible with t
he previous return type "long".
"/usr/include/unistd.h", line 167.17: 1506-343 (S) Redeclaration of
lseek64 differs from previous declaration on li
ne 165 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 167.17: 1506-050 (I) Return type "long long"
in redeclaration is not compatible with
the previous return type "long".
"/usr/include/unistd.h", line 167.17: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous ty
pe "long".
"/usr/include/sys/lockf.h", line 50.20: 1506-343 (S) Redeclaration of
lockf64 differs from previous declaration on
line 48 of "/usr/include/sys/lockf.h".
"/usr/include/sys/lockf.h", line 50.20: 1506-377 (I) The type "long long"
of parameter 3 differs from the previous
type "long".
"/usr/include/unistd.h", line 602.33: 1506-343 (S) Redeclaration of
ftruncate64 differs from previous declaration o
n line 600 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 602.33: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 629.33: 1506-343 (S) Redeclaration of
truncate64 differs from previous declaration on
line 627 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 629.33: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 646.33: 1506-343 (S) Redeclaration of
pread64 differs from previous declaration on li
ne 643 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 646.33: 1506-377 (I) The type "long long" of
parameter 4 differs from the previous ty
pe "long".
line 48 of "/usr/include/sys/lockf.h".
"/usr/include/sys/lockf.h", line 50.20: 1506-377 (I) The type "long long"
of parameter 3 differs from the previous
type "long".
"/usr/include/unistd.h", line 602.33: 1506-343 (S) Redeclaration of
ftruncate64 differs from previous declaration o
n line 600 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 602.33: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 629.33: 1506-343 (S) Redeclaration of
truncate64 differs from previous declaration on
line 627 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 629.33: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 646.33: 1506-343 (S) Redeclaration of
pread64 differs from previous declaration on li
ne 643 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 646.33: 1506-377 (I) The type "long long" of
parameter 4 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 647.33: 1506-343 (S) Redeclaration of
pwrite64 differs from previous declaration on l
ine 644 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 647.33: 1506-377 (I) The type "long long" of
parameter 4 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 712.25: 1506-343 (S) Redeclaration of
fclear64 differs from previous declaration on l
ine 709 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 712.25: 1506-050 (I) Return type "long long"
in redeclaration is not compatible with
the previous return type "long".
"/usr/include/unistd.h", line 712.25: 1506-377 (I) The type "long long" of
parameter 2 differs from the previous ty
pe "long".
"/usr/include/unistd.h", line 713.25: 1506-343 (S) Redeclaration of
fsync_range64 differs from previous declaration
on line 710 of "/usr/include/unistd.h".
"/usr/include/unistd.h", line 713.25: 1506-377 (I) The type "long long" of
parameter 3 differs from the previous ty
pe "long".
make: 1254-004 The error code from the last command is 1.


Stop.
make: 1254-004 The error code from the last command is 1.


Stop.
make: 1254-004 The error code from the last command is 2.


Stop.
make: 1254-004 The error code from the last command is 1.

 



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