[gmx-users] vdw radii in pdb
Anton Feenstra
feenstra at chem.vu.nl
Thu Feb 27 09:12:36 CET 2003
Frauke Meyer wrote:
>
> Hi all,
>
> is their a way to write out coordinates in pdb format with vdw radii in
> the last column?
editconf can put the atom radius in either the B-factor (-mead) or
the occupancy fields (-grasp) of the pdb format.
radii are taken from vwdradii.dat (in $GMXLIB, or <gmxpath>/share/top).
--
Groetjes,
Anton
_____________ _______________________________________________________
| | |
| _ _ ___,| K. Anton Feenstra |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|( | )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands |
| \_/ \_/ | | | Room P275 Tel: +31 20 44 47608 Fax: +31 20 44 47610 |
| | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/ |
| | "If Life Seems Jolly Rotten, There's Something You've |
| | Forgotten !" (Monty Python) |
|_____________|_______________________________________________________|
More information about the gromacs.org_gmx-users
mailing list