[gmx-users] curious 'File not found' error

[Luciane Vieira de Mello]

Thanks Daan, but that's not it.  It looks like it is the file size issue
after all.

Our kernel is 2.4.7-10.  Is that old enough to have these problems?

Any thoughts in general about how to avoid this kind of problem when we
simulate large (interesting) proteins?

Thanks

Luciane


+-------------------------------------------------------------------------+
|                  Dra. Luciane Vieira de Mello Rigden                    |
| e-mail: mello at cenargen.embrapa.br                                       |
| Embrapa Recursos Geneticos e Biotecnologia                              |
| Parque Estacao Biologica           |  http://www.cenargen.embrapa.br    |
| PqEB - Final - Av. W3 Norte        |  Phone:  +55 (61)448-4741          |
| 70770-900, Brasilia-D.F.-BRAZIL    |  Fax:    +55 (61)340-3658          |
+-------------------------------------------------------------------------+



On Mon, 6 Jan 2003, Daan Virtual wrote:

>
> Lucy
>
> I notice your file is -rw-------
>
> type
> chmod 777 yourfilename
>
> and then try again
>
> Daan
>
> On Mon, 6 Jan 2003, Luciane Vieira de Mello wrote:
>
> > Hi
> >
> > Thanks for that tip Rainer.  What's the solution if my file is on the
> > local hard disk - no nfs involved, presumably?
> >
> > Luciane
> >
> >
> > +-------------------------------------------------------------------------+
> > |                  Dra. Luciane Vieira de Mello Rigden                    |
> > | e-mail: mello at cenargen.embrapa.br                                       |
> > | Embrapa Recursos Geneticos e Biotecnologia                              |
> > | Parque Estacao Biologica           |  http://www.cenargen.embrapa.br    |
> > | PqEB - Final - Av. W3 Norte        |  Phone:  +55 (61)448-4741          |
> > | 70770-900, Brasilia-D.F.-BRAZIL    |  Fax:    +55 (61)340-3658          |
> > +-------------------------------------------------------------------------+
> >
> >
> >
> > On Mon, 6 Jan 2003, Rainer Boeckmann wrote:
> >
> > > this may be due to an old NFS-version. As David pointed out two days ago, NFS3
> > > supports files >2GB...
> > > rainer
> > >
> > > Luciane Vieira de Mello wrote:
> > >
> > > > Hi everyone
> > > >
> > > > When I try to look at my trajectory
> > > >
> > > > ngmx -s xxx.tpr -f traj.trr
> > > >
> > > > I get this error
> > > >
> > > > Fatal error: File traj.trr not found
> > > >
> > > > even though the file is patently there
> > > >
> > > > -rw-------    1 mello    desenv   2719735808 Jan  6 09:35 traj.trr
> > > >
> > > > I get the same problem with a different large file when I try to restart a
> > > > trajectory.
> > > >
> > > > Is this some problem with Linux file size, or something different?
> > > >
> > > > Many thanks in advance
> > > >
> > > > Luciane
> > > ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿà›î±ê왨¥Šx%ŠË`›î±êìþ
> > > 虧,þŠà†ÛiÿÿðÃஉšrÏè®æj)fjåŠËbú?‚lÿºÇ«°ù^jǝ¢í¦‹-þéÿ²æìr¸›z·ª¹ë-²Ú-…éb²ßÔ±ëa{0Š{^­öœzŠìzwb¶Ú ›î±êìþ·ª¹ë-þ
> > > 虧,þŠà
> > >
> >
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>
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> Wellcome Trust Biocentre, Dow Street   TEL: ++ 44 1382 344979
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