[gmx-users] Fatal error: ci = -2147483616 should be in 0 ...
ikass at mail.ls.huji.ac.il
Wed Jan 15 09:28:06 CET 2003
Dear Peter, yes the broken machine is AMD k and the working one is PIII. So I
guess I will have to shut down the x86 optimizations (I am learning gromacs now,
I can spend the time). Do you know if the problem happens in newer AMD chips?
We intend to buy a small cluster for runing gromacs.
Quoting "Peter C. Lai" <sirmoo at cowbert.2y.net>:
> What kind of machine are you running on (architecture etc?) -
> is the broken machine the same configuration as the working one?
> Back in the day, I ran into this when I compiled 3.1.4 on AMD K6-2 with x86
> optimizations turned on. It worked when i turned off those optimizations, but
> the resulting runs ended up too slow, and I have only been using gromacs for
> smaller simulations.
> On Tue, Jan 14, 2003 at 10:23:55PM +0200, Itamar Kass wrote:
> > HI all, I still have the error "Fatal error: ci = -2147483616 should be
> in 0
> > . 159 [FILE nsgrid.c, LINE 210]" when using mdrun. In order to be sure I
> > correctly installed gromacs, I reinstalled Mandrake 9.0, then installed
> > fftw-2.1.3-2.i386.rpm, fftw-devel-2.1.3-2.i386.rpm and
> > Even then the problem happens again. Does someone know how to over come
> it, I
> > have other Mandrake 9.0 machine, and it does not happen there, Thanks,
> > Quoting David <spoel at xray.bmc.uu.se>:
> > > On Tue, 2003-01-14 at 14:02, Itamar Kass wrote:
> > > > Hi David, yes, I compiled both singel and double fftw, so I removed
> > > and
> > > > reinstall them from rpm this time, but again I got the same message.
> > > The question is not what you compiled, but what you are using. The OS
> > > may come with fftw installed. Try:
> > > ldd `which mdrun`
> > > to see which libraries are used.
> > >
> > > If all is installed well the demo should run though...
> > > --
> > > Groeten, David.
> > > ________________________________________________________________________
> > > Dr. David van der Spoel, Biomedical center, Dept. of Biochemistry
> > > Husargatan 3, Box 576, 75123 Uppsala, Sweden
> > > phone: 46 18 471 4205 fax: 46 18 511 755
> > > spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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> > >
> > ===========================================
> > | Itamar Kass
> > | The Alexander Silberman
> > | Institute of Life Sciences
> > | Department of Biological Chemistry
> > | The Hebrew University, Givat-Ram
> > | Jerusalem, 91904, Israel
> > | Tel: +972-(0)2-6585146
> > | Fax: +972-(0)2-6584329
> > | Email: ikass at vms.huji.ac.il
> > | Group Homepage: http://www.ls.huji.ac.il/~membranelab/
> > ============================================
> > _______________________________________________
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> Peter C. Lai
> University of Connecticut
> Dept. of Molecular and Cell Biology
> Yale University School of Medicine
> SenseLab | Research Assistant
> gmx-users mailing list
> gmx-users at gromacs.org
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
| Itamar Kass
| The Alexander Silberman
| Institute of Life Sciences
| Department of Biological Chemistry
| The Hebrew University, Givat-Ram
| Jerusalem, 91904, Israel
| Tel: +972-(0)2-6585146
| Fax: +972-(0)2-6584329
| Email: ikass at vms.huji.ac.il
| Group Homepage: http://www.ls.huji.ac.il/~membranelab/
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