[gmx-users] curious 'File not found' error
spoel at xray.bmc.uu.se
Thu Jan 16 21:33:11 CET 2003
On Thu, 2003-01-16 at 18:52, Luciane Vieira de Mello wrote:
> Dear David
> I've been trying to read a big file
> -rwxrwxrwx 1 mello desenv 4327006208 Jan 16 13:44 traj.trr
> with kernel 2.4.18.
> It opens fine with ngmx which shows that Linux constraint has been removed
> (no more 'file not found' error). However, although it contains around
> 3.8 ns
> [mello at coruja protein+2PG_new]$ tail md.lis
> step 3873410, will finish at Fri Jan 24 11:57:08 2003
> it only shows up to 1.8 ns
> Last frame 912 time 1824.000
> WARNING: Incomplete frame: nr 913 time 1826
> Is there some limit in GROMACS too? Maybe something that's been fixed in
> a more recent version (we have 3.14)
That is the most recent official version. You can turn on the large file
support at the compilation stage, but configure does it by default if
the OS supports it. I don't know about the rpms.
It looks like a 2Gb problem still. Is this just ngmx, or also other
programs? By the way, using .xtc will save you a factor of three in size
for the trajectory.
And please do send your questions to the gmx-users list....
Dr. David van der Spoel, Dept. of Cell and Molecular Biology
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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