[gmx-users] Segmentation fault

David spoel at xray.bmc.uu.se
Sun Jan 19 15:57:52 CET 2003

On Sun, 2003-01-19 at 09:07, Itamar Kass wrote:
>     HI all, I have gromacs 3.1.5 on a OSX 10.2.3 box, it run grate, till 
> I try to pre-compile the mdrun file.  When I write "grompp -f md.mdp -c 
> m2.gro -r m2.gro -p m2.top -o m2_vacou.tpr" the machine answer 
> "Segmentation fault".  Now, I know the machine hate me, but I can I 
> over come it?
It depends. MacOS X had some quirks until recently, and you seem to have
the latest version which may not have been tested.

Anyway, do you have access to a different machine with gromacs (e.g.
Linux)? That would be useful to test whether the problem is in the OS or
in Gromacs. If all else fails you can send me a tar file containing all
your input files (off the list).

Groeten, David.
Dr. David van der Spoel, 	Dept. of Cell and Molecular Biology
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel

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