[gmx-users] inserting new residue

[sadhna]

hi,
    I have inserted a new residue in the residue toplogy file. Gromacs
accepts it but the problem is when i see it in web lab viewer it shows
single bond for carbonyl oxygen(of the peptide bond) instead of double
bond .

Where could i have gone wrong?


rgds

sadhna

Research Scholar
Dept of Chemical Engg
Indian Institute of Technology,Powai
Mumbai-400076
India