[gmx-users] Any ideas/suggestions on this error?
David
spoel at xray.bmc.uu.se
Wed Jul 16 07:36:01 CEST 2003
On Wed, 2003-07-16 at 04:20, Dallas Warren wrote:
> Just been trying to install GROMACS on my workstation.
>
> Dual Xeon 2.4G
> Redhat 9.0
>
> Compiled from source:
> LAM 7.0
> fftw 2.1.3.2
> GROMACS 3.1.4
>
> Everything appears to install/compile OK. However, when I attempt to run
> one of the GROMACS programs (say mdrun -h) this error appears ......
>
> mdrun: relocation error: /usr/local/lib/libsfftw_mpi.so.2: symbol errno,
> version GLIBC_2.0 not defined in file libc.so.6 with link time reference
>
> ....... any suggestions?
yes, you have compiled fftw with mpi but not gromacs or the other way
around. You want to use --enable-mpi flag on everything
>
> Catch ya,
>
> Dr. Dallas Warren
> Research Fellow
> Department of Pharmaceutical Biology and Pharmacology
> Victorian College of Pharmacy, Monash University
> 381 Royal Parade, Parkville VIC 3010
> dallas.warren at vcp.monash.edu.au
> +61 3 9903 9083
> --------------------------------------------------------------------------
> When the only tool you own is a hammer, every problem begins to resemble a nail.
>
> _______________________________________________
> gmx-users mailing list
> gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
--
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, Dept. of Cell and Molecular Biology
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
More information about the gromacs.org_gmx-users
mailing list