[gmx-users] Combined essential dynamics analysis

[Ruben Martinez Buey]

> Dear Bert,

Thanks a lot four reply.

> >
> > Average projection (mean):
> > eigenvec 1: -0.365220            0.457450
> > eigenvec 2:   0.137630          -0.169460
> > eigenvec 3:   0.137790          -0.319940
> > eigenvec 4:   0.068647          -0.078291
> > eigenvec 5:   0.087228            0.040858
>
> hmm, I suppose the two trajectories had a different length? Since
> otherwise the projections should be symmetrical with respect to zero.
> ( ie -0.3   0.3 etc)

They must be exactly symmetrical with respect to zero?
I mean -0.40976 and 0.41711 for example is right?

I´ve generated 500 structures in each run with CONCOORD, and then just merged them.
Thanks a lot again four your help
Regards,
Ruben



>
>
> Bert
>
> ____________________________________________________________________________
> Dr. Bert de Groot
>
> Max Planck Institute for Biophysical Chemistry
> Theoretical molecular biophysics group
> Am Fassberg 11
> 37077 Goettingen, Germany
>
> tel: +49-551-2011306, fax: +49-551-2011089
>
> email: bgroot at gwdg.de
> http://www.mpibpc.gwdg.de/abteilungen/071/bgroot
> ____________________________________________________________________________
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--
___________________________________________

Rubén Martínez-Buey. PhD student
Protein Function and Structure Dept. Lab. 352
Centro de Investigaciones Biológicas (CIB-CSIC)
C/ Velázquez, 144,  28006  MADRID (SPAIN)
Tlf: +34-91-561 18 00 ext. 4380
Fax: +34-91-562 75 18


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