[gmx-users] Compiling Problems

[Dr. Alexander Pazur]

Dear GROMACS newsgroup members

I wish to install GROMACS on a IBM RS6000 machine under 
AIX4.3.3. with LAM-MPI for multicomputing. I have no Fortran-
Compiler. LAM-MPI, IBM-MASS, FFTW and LessTif are installed.
I am logged in as root-user. 
LAM-MPI is checked with its commands and works systemwide fine.
The GROMACS ./configure swithes are:

--prefix=/people/odin/gromacs --disable-fortran --disable-float --enable-
mpi --with-x

./configure works (to message "gromacs is ready to compile").
But "make" afterwards stops having done some tasks, here 
is the protocol (screen messages from prompt to prompt):

4:root at odin:/people/odin/gromacs/gromacs-3.1.4 # make 
Making all in src
        cd ..  && CONFIG_FILES= CONFIG_HEADERS=src/config.h  
/bin/sh ./config.status
config.status: creating src/config.h
config.status: src/config.h is unchanged
        make  all-recursive
Making all in gmxlib
        source='3dview.c' object='3dview.lo' libtool=yes  
depfile='.deps/3dview.Plo' tmpdepfile='.deps/3dview.TPlo'  
depmode=gcc /bin/sh ../../config/depcomp  /bin/sh 
../../libtool --mode=compile mpicc -DHAVE_CONFIG_H -I. -I. -
I../../src   -I../../include -
DGMXLIBDIR=\"/people/odin/gromacs/share/top\" -
I/usr/local/include   -c -o 3dview.lo `test -f 3dview.c || 
echo './'`3dview.c
mpicc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -
DGMXLIBDIR=\"/people/odin/gromacs/share/top\" -
I/usr/local/include -c 3dview.c -Wp,-MD,.deps/3dview.TPlo -o 
3dview.o
In file included from ../../include/sysstuff.h:52,
                 from 3dview.c:34:
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:448: conflicting types for `fgetpos64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:288: previous declaration of 
`fgetpos64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:451: conflicting types for `fseeko64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:394: previous declaration of `fseeko64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:452: conflicting types for `fsetpos64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:290: previous declaration of 
`fsetpos64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:453: conflicting types for `ftello64'
/usr/bin/../lib/gcc-lib/powerpc-ibm-aix4.3.3.0/2.9-aix43-
010414/include/stdio.h:395: previous declaration of `ftello64'
In file included from ../../include/sysstuff.h:56,
                 from 3dview.c:34:
/usr/include/unistd.h:167: conflicting types for `lseek64'
/usr/include/unistd.h:165: previous declaration of `lseek64'
In file included from /usr/include/unistd.h:543,
                 from ../../include/sysstuff.h:56,
                 from 3dview.c:34:
/usr/include/sys/lockf.h:64: conflicting types for `lockf64'
/usr/include/sys/lockf.h:62: previous declaration of `lockf64'
In file included from ../../include/sysstuff.h:56,
                 from 3dview.c:34:
/usr/include/unistd.h:576: conflicting types for `ftruncate64'
/usr/include/unistd.h:574: previous declaration of 
`ftruncate64'
/usr/include/unistd.h:603: conflicting types for `truncate64'
/usr/include/unistd.h:601: previous declaration of 
`truncate64'
/usr/include/unistd.h:620: conflicting types for `pread64'
/usr/include/unistd.h:617: previous declaration of `pread64'
/usr/include/unistd.h:621: conflicting types for `pwrite64'
/usr/include/unistd.h:618: previous declaration of `pwrite64'
/usr/include/unistd.h:674: conflicting types for `fclear64'
/usr/include/unistd.h:671: previous declaration of `fclear64'
/usr/include/unistd.h:675: conflicting types for 
`fsync_range64'
/usr/include/unistd.h:672: previous declaration of 
`fsync_range64'
make: 1254-004 The error code from the last command is 1.


Stop.
make: 1254-004 The error code from the last command is 1.


Stop.
make: 1254-004 The error code from the last command is 2.


Stop.
make: 1254-004 The error code from the last command is 1.


Stop.
4:root at odin:/people/odin/gromacs/gromacs-3.1.4 # 

********************************************
Is this error known ? Can somebody help me?
Many Thanks.

Alexander Pazur
*********************************************
 Dr. Alexander Pazur
 Wiss. Assistent, EDV-Systembetreuer
 Department Biologie I der Universitaet Muenchen: Botanik
 Menzingerstr. 67
 D-80638 Muenchen
*********************************************
Tel.: 089-17861-290 / -296
Fax.: 089-17861-185
pazur at botanik.biologie.uni-muenchen.de
http://www.botanik.biologie.uni-muenchen.de/pazur