[gmx-users] pdb2gro

[Bert de Groot]

Milan Melichercik wrote:
> 
> Hi all,
> 
> I've downloaded a DMPC membrane from Dr. Peter Tieleman's site
> (http://moose.bio.ucalgary.ca/Downloads), but when I've tried to convert it
> into .gro and .top by using pdb2gmx, I've got this message:
> 
[...]

for membranes you don't need pdb2gmx. At Peter's website you'll also find
the necessary .itp files which you can include in your topology. And at
http://www.gromacs.org/topologies/force_fields.php
you'll find the neccessary force field files.


Bert

____________________________________________________________________________
Dr. Bert de Groot

Max Planck Institute for Biophysical Chemistry
Theoretical molecular biophysics group
Am Fassberg 11 
37077 Goettingen, Germany

tel: +49-551-2011306, fax: +49-551-2011089

email: bgroot at gwdg.de
http://www.mpibpc.gwdg.de/abteilungen/071/bgroot
____________________________________________________________________________