[gmx-users] em and backbone

[jxs818 at bham.ac.uk]

Hi all, 
 I have producted a homology model of a enzyme i am 
working on. Although there is very good sequence 
similarity between target and template there is a region 
which contains a proline which is at different positions 
throughout the family. I have performed em (cg and steep) 
on the protein, but on comparing the pre & post em 
structures i can not see any change in the area of this 
proline. Should I expect to ?? or does the MD take care of 
this??
As always any help will be emotionally recieved
JOhn