[gmx-users] pdb2gmx

Arturas a3arzi at vaidila.vdu.lt
Tue Jun 24 13:13:00 CEST 2003


I'm quite a novice and got simple questions:

What kind of structure is generated with pdb2gmx -q *.pdb?
Manual says that pdb2gmx add protons, but I can not check the result
of how right everything there in my structure ?

'protonate' adds hydrogens. Can it add just polar hydrogens ? Tryed but
without success.

With best
Arturas Z.

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