[gmx-users] trjconv -pbc

[Andre Farias de Moura]

hello all,

I've performed some simulations of a micellar system and
I would like to make animations of these trajectories,
but some lipids jump across the box boundaries all the
time. I'm using trjconv -pbc whole, followed by trjconv
-pbc nojump, but then the lipid molecules break up in the
boundary region. What am I doing wrong?

thanks in advance,

Andre'


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     Andre' Farias de Moura
        Graduate Student
      Departamento de Quimica
 Universidade Federal de Sao Carlos
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