[gmx-users] problems with gromacs-3.1.5_pre1 on osx.2

[Itamar Kass]

   Dear Mr. choon-peng
    I used your adviced, regarding the full path of the gromacs programs, and it
works, thank you very much, Kass.

Quoting Chng Choon Peng <cpchng at bii.a-star.edu.sg>:

> Hi Itamar Kass,
> 
>   I have experience installing Gromacs 3.1.5_beta on dual G4 PowerMac and
> Xserves, so I think I can help.
> 
> I got that error before when installing on the PowerMac.
> What I did was to log-off and logon again to clear any environmental
> settings for FFTw before configuring/installing GROMACS.
> 
> Also, you would need to specify the full path to grompp when you run it.
> 
> If you still have that segmentation error, let me know.
> 
> 
> Regards,
> choon-peng
> -- 
> Mr. Choon-Peng CHNG
> Scientific Programmer
> BioInformatics Institute (BII), A*STAR
> 21, Heng Mui Keng Terrace, Rm 03-53, Singapore 119613
> Tel (O): (65) 68746173 Fax (O): (65) 67781250
> www.bii.a-star.edu.sg/~cpchng
> 
> 
> On 3/9/03 11:04 PM, "Itamar Kass" <ikass at mail.ls.huji.ac.il> wrote:
> 
> >  Hi fellows, I am working upon a dual G4 mac, with osx.2.  I installed
> lam-mpi
> > successfully (I have tested it using the lamtest), also the fftw-2.1.3 and
> the
> > gromacs-3.1.5_pre1 were installed without any bugs seen.  The problem
> arises
> > when I run gromacs:
> > 
> > tmmac0 5:05pm ~/pdb2gmx -h
> >                        :-)  G  R  O  M  A  C  S  (-:
> > 
> > Segmentation fault
> > 
> > 
> > The steps I did (all as root) to install fftw:
> > chmod u+x config.guess config.sub
> > perl -pi -e 's/-06/-03/' configure
> > /configure --enable-float --enable-mpi --host=powerpc
> > --prefix=/sw/include/fftw
> >> configure.log 
> > make 
> > make install 
> > 
> > and to install gromacs:
> > /bin/bash ./configure --enable-mpi --disable-shared –without-x
> > -prefix=/sw/include/gromacs_3.1.5 > configure.log
> > make 
> > make install 
> > make links 
> > 
> > Does anyone has idea?  Thanks all, Itamar Kass.
> > 
> > 
> > 
> > ********************************************
> > Computers are like airconditioners... They don't work well with Windows
> open.
> > ********************************************
> > 
> > ===========================================
> > | Itamar Kass
> > | The Alexander Silberman
> > | Institute of Life Sciences
> > | Department of Biological Chemistry
> > | The Hebrew University, Givat-Ram
> > | Jerusalem, 91904, Israel
> > | Tel: +972-(0)2-6585146
> > | Fax: +972-(0)2-6584329
> > | Email: ikass at vms.huji.ac.il
> > | Group Homepage: http://www.ls.huji.ac.il/~membranelab/
> > ============================================
> > 
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> 
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> 


********************************************
Computers are like airconditioners... They don't work well with Windows open.
********************************************

===========================================
| Itamar Kass
| The Alexander Silberman
| Institute of Life Sciences
| Department of Biological Chemistry
| The Hebrew University, Givat-Ram
| Jerusalem, 91904, Israel
| Tel: +972-(0)2-6585146
| Fax: +972-(0)2-6584329
| Email: ikass at vms.huji.ac.il
| Group Homepage: http://www.ls.huji.ac.il/~membranelab/
============================================