[gmx-users] Re: [Fwd: normal mode]

[Anton Feenstra]

muthu12 wrote:
> I have tried in FAQ and also on line manuals. I have difficulty in gmx users questions.

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> When I run autocorrelation through g-analyze for 1.5 ns I get four graphs for msd
> and auto correlation fort 750 ps. How can I interrupt it. Ithinh it has got four delta.
> I am not sure.

I'm sorry, but I do not understand your question.

> What is the use of 3D proj.  Where I can usefulness of these parameters. I am
> interested in principle component analysis

The same as a 1d or 2d projection, but with the addition of the possible
correlation in a third dimension. I've used it to look at conformational
clustering of a small peptide.

> thank you
> Prabhakaran
> I saw similar questions unanswered in FAQ.

You really should consider joining the mailing list. You ask questions
I don't know the answer to, also, I might be too busy at times to answer.
In both cases you may get a quicker and/or better answer from any of the
hudred or so other users on the list. If you have problems subscribing,
please tell me what goes wrong, and I'll try to help you and/or fix it.


-- 
Groetjes,

Anton
  _____________ _______________________________________________________
|             |                                                       |
|  _   _  ___,| K. Anton Feenstra                                     |
| / \ / \'| | | Dept. of Pharmacochem. - Vrije Universiteit Amsterdam |
|(   |   )| | | De Boelelaan 1083 - 1081 HV Amsterdam - Netherlands   |
| \_/ \_/ | | | Tel: +31 20 44 47608 - Fax: +31 20 44 47610           |
|             | Feenstra at chem.vu.nl - www.chem.vu.nl/~feenstra/       |
|             | "If You See Me Getting High, Knock Me Down"           |
|             | (Red Hot Chili Peppers)                               |
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