[gmx-users] Help with topology file

David van der Spoel spoel at xray.bmc.uu.se
Fri Mar 21 21:25:07 CET 2003


On Fri, 2003-03-21 at 15:18, Alexandre Suman de Araujo wrote: David
wrote:
            
Then I don't need to have [bonds] and [angles] session and I can erase
them from the file??? Or the information from ffoplsaa.* files will
overwrite the information in the topology file??? 
The definition of the atomtypes that you are talking is what I showed in
my first msg, didn't it???
This possible dihedrals I think was specified automatically by PRODRG...
but I'll check them again

Yes you do need all that. You got that from prodrg didn't you?


Thanks for your answer.



-- 
Alexandre Suman de Araujo
asaraujo at if.sc.usp.br
UIN: 6194055
IFSC - USP - São Carlos - Brasil
-- 
Groeten, David.
________________________________________________________________________
Dr. David van der Spoel, 	Dept. of Cell & Mol. Biology
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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