[gmx-users] (OT) Nice biological MD exercises ?

[Itamar Kass]

   Try the site www2.umdnj.edu/~kerrigje/ I used it. 
 
Quoting Marc Baaden <baaden at smplinux.de>: 
 
>  
> Hi, 
>  
> this post is slightly off-topic, but I think I will 
> hit the right community. So pls be kind to me .. 
>  
> I have to give a (*very*) short introductory course 
> on MD (1h30) with exercises (2h30). As time is extremely 
> short, I am looking for very educationnally significant 
> exercises that are doable in such a short time and 
> illustrate how MD can be useful for the study of proteins 
> and peptides. 
>  
> I am also taking any suggestions on what program to use. 
> I think it might be hard to get the exercise done and 
> explain how gromacs works in 2h .. 
>  
> Ideal would be a graphical front-end, but that we don't 
> have right now .. ? 
>  
> Thanks for any hints, 
> Cheers, 
>  
>   Marc 
>  
> NB: Some further information on the audience: they are 
> mostly chemists and biochemists working in the field of 
> proteins and peptides, mostly experimentalists (NMR, 
> crystallographers, ..). 
> The objective is to show how dynamic structures can be, 
> and what kind of information one can obtain from an MD 
> simulation. 
>  
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Computers are like airconditioners... They don't work well with Windows open. 
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=========================================== 
| Itamar Kass 
| The Alexander Silberman 
| Institute of Life Sciences 
| Department of Biological Chemistry 
| The Hebrew University, Givat-Ram 
| Jerusalem, 91904, Israel 
| Tel: +972-(0)2-6585146 
| Fax: +972-(0)2-6584329 
| Email: ikass at vms.huji.ac.il 
| Group Homepage: http://www.ls.huji.ac.il/~membranelab/ 
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