[gmx-users] Difference of g_rmsf, g_rms, g_rmsdist

[Yuhua Song]

Dear Gromacs developer and user:

I intend to analyze the conformational change of the protein structure change after 
2ns equilibration. after 2ns equilibration, I get the *.trj file. I am wondering, 
which program is better for me to realize this.using g_rms, g_rmsf, or g_rmsdist?
Using g_rms, I always get relative big number.

So, I am wondering which program that I need to use for the calculation of conformation change.


Thanks,

Yuhua