[gmx-users] Difference of g_rmsf, g_rms, g_rmsdist

Yuhua Song yhsong at ccb.wustl.edu
Fri Nov 7 17:41:01 CET 2003

Dear Gromacs developer and user:

I intend to analyze the conformational change of the protein structure change after 
2ns equilibration. after 2ns equilibration, I get the *.trj file. I am wondering, 
which program is better for me to realize this.using g_rms, g_rmsf, or g_rmsdist?
Using g_rms, I always get relative big number.

So, I am wondering which program that I need to use for the calculation of conformation change.



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