[gmx-users] Generate specific protein forcefield and topology
spoel at xray.bmc.uu.se
Sat Nov 8 10:32:01 CET 2003
On Sat, 2003-11-08 at 01:06, Yuhua Song wrote:
> I am planning to do some analysis of the protein interaction with the
> biomembrane using Gromacs. I had got many input for the biomembrane force
> field and topology. I am wondering whether there are some nice program and
> tools suitable for generating the topology and force field of specific
> protein that is not available in current Gromacs forcefield?
please be more specific. all proteins consisting of natural amino acids
can be treated in gromacs
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David van der Spoel, PhD, Assist. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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