[gmx-users] minimum distance matrix and secondary structure
qzou at iupui.edu
Thu Nov 13 20:57:00 CET 2003
I heard that the average minimum distance matrix can be used to
identify secondary and tertiary structure and then can be used to
monitor the changes of these structural elements with time.
Now I have used g_mdmat to generate the NxN matrix. How do I visually
identify the these structures on the contour map, in terms of the
location of alpha-helix, beta-sheet, etc? Thanks.
Q. Zou, PhD
More information about the gromacs.org_gmx-users