[gmx-users] how to change the radius of atoms in VMD

Ran Friedman ran at hemi.tau.ac.il
Sun Nov 16 10:49:01 CET 2003

Dear Albert,

You can change the radii in VMD. Below as an example for sulphur atoms
in proteins:

set sel [atomselect top "name SG or name SE"]
$sel set radius 1.775

The name is the name of the atom in the topology file (in this case,
it's a pdb file).


Albert Sun wrote:

> Dear users,
> I am using VMD to view  .trr files from Gromacs, and found that all
> atoms appear in the same radius.
> I don't know if can change the radius of atoms when view the atoms,
> either by Gromacs or by VMD. Appreciate you can advise me.
> Many Thanks,
> Albert
> -----------------------------------------------------------------------
> Do you Yahoo!?
> Protect your identity with Yahoo! Mail AddressGuard

Ran Friedman
Laser laboratory for fast reactions in biology
Department of biochemistry
Faculty of life sciences
Tel-Aviv university

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20031116/b4b463f2/attachment.html>

More information about the gromacs.org_gmx-users mailing list