[gmx-users] g_rms g_dipole

[parinald at unsl.edu.ar]

Hello gmx´ers:
              I done MD for CL- and NA+ in water.
g_rms compares two estructures by computing RMSD, now I get two curves 
CL- and NA+, but I dont know how to reed that:
are relative position?
are related with size of the simulation box?

The file aver.xvg (of g_dipole) contains <|M|^2> and <|M|>^2, what the 
meaning of <|M|>^2 / <|M|^2> ? what is N?.
                                          Thank you. Pablo.