[gmx-users] Help: No default LJ-14...

[Henrik Rundgren]

hello all.
I have a problem.
I have run some simulations with Gromacs, and all seems fine.
No I try to run a small peptide in wter, and I get the following warnings:

 Generated 1179 of the 1378 non-bonded parameter combinations
WARNING 1 [file "top.top", line 86]:
  No default LJ-14 types, using zeroes
WARNING 2 [file "top.top", line 87]:
  No default LJ-14 types, using zeroes
WARNING 3 [file "top.top", line 88]:
  No default LJ-14 types, using zeroes
WARNING 4 [file "top.top", line 109]:
  No default LJ-14 types, using zeroes
WARNING 5 [file "top.top", line 110]:
  No default LJ-14 types, using zeroes
WARNING 6 [file "top.top", line 111]:
  No default LJ-14 types, using zeroes
Excluding 3 bonded neighbours for Protein 1
Excluding 2 bonded neighbours for SOL 884

Then it continues and makes the infile .trp, but I doubt that this is ok 
to run an simulation on....
I have checked in the topology file, and the default type value is 1 
(=LJ)... so I don't see where this warning is coming from.

thanks for the help.
sincerely,
henrik

-- 
_________________________________________________________________
Henrik Rundgren
Division of Physical Chemistry
Arrhenius Laboratory
Stockholm University
S-106 91 Stockholm
Sweden

E-mail:    Henrik at physc.su.se
Telephone: +46-(0)8-16 12 63
Fax:       +46-(0)8-15 21 87
Website:   www.fos.su.se/~henrik
_________________________________________________________________