[gmx-users] grompp problem
vraut at CLEMSON.EDU
Thu Oct 16 07:36:01 CEST 2003
I am trying to run a simulation. I started with this sequence of commands:
pdb2gmx, editcconf (to generate box), genbox ( to fill it with water),
Then I ran the following grompp command:
grompp -f em.mdp -po emout.mdp -c input.gro -n input.ndx -p input.top -pp
output.top -o output.tpr
but it gives me this error:
WARNING 1 [file "1.top", line 1371]:
No default Bond types, using zeroes
what should I do now??
I have been running similar simulations but it never gave me this error,
why is it giving one now??
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