[gmx-users] EOF ??

Marco Ceruso mceruso at physbio.mssm.edu
Mon Sep 15 16:30:02 CEST 2003

David was just indicating a way to do it all in one command line. EOF or any
other symbol will feed the remaining input until the next EOF to the invoked
make_ndx -f topol.tpr
and then
trjconv -n
and you'll see.

  -----Original Message-----
  From: gmx-users-admin at gromacs.org [mailto:gmx-users-admin at gromacs.org]On
Behalf Of Tanos
  Sent: Monday, September 15, 2003 8:05 AM
  To: gmx-users at gromacs.org
  Subject: [gmx-users] EOF ??

	Dear David,
	Thanks a lot for your help but a strinking doubt remains in my mind: Sorry
if it looks boring for you, but I am yet a dummie in gmx and the expressions
"<< EOF q EOF" or "<< EOF" does not make sense for me. What does it means
????? I've already used make_ndx -f topol.tpr ... and than, trjconv -n ....
My problem is just wich files to use after topol.tpr and trjconv -n and wich
flags to use. I've tryed .gro but it did'not work.
	Thanks a lot in advance.
	Tanos C. C. Franca.
	IME - Rio de Janeiro - Brazil

On Sat, 2003-09-13 at 19:52, Tanos wrote:
>     Dear users,
>     I am trying without success to extract my protein from the water box
> final .gro file generated in a dynamics. I have used trjconv but it's
> not working because I don't know the  rigth sequence of flags and
> options to use. Does someone know how should I proceed ????
>     Lots of thanks in advance.
  make_ndx -f topol.tpr << EOF q EOF
trjconv -n << EOF

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